oPOSSUM 3.0

May 2012

Download

Download just the oPOSSUM-3 API and stand-alone analysis scripts here or via FTP

Download the full oPOSSUM-3 code tree including the API, stand-alone analysis scripts and web code here or via FTP

The oPOSSUM3 source code is also available as a public repository on GitHub under wassermanlab/oPOSSUM3.

The oPOSSUM-3 databases may be downloaded directly from our database servers using the mysldump facility.

There are currently five species databases and one database used for the TF cluster analysis:

oPOSSUM3_human
oPOSSUM3_mouse
oPOSSUM3_worm
oPOSSUM3_fly
oPOSSUM3_yeast
TFBS_cluster

The databases are hosted on opossum.cmmt.ubc.ca and may be accessed using MySQL username 'opossum_r'. It may be necessary to use the --skip-lock-tables option to mysqldump, e.g.:
$ mysqldump -h opossum.cmmt.ubc.ca -u opossum_r --skip-lock-tables oPOSSUM3_human > oPOSSUM3_human.sql