Version 3.0

Yeast Single Site Analysis

Select Analysis Parameters

STEP 1: Enter target (co-expressed) genes

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Paste gene IDs (max. 5000 gene IDs):

OR upload a file containing a list of gene identifiers (max. 5000 gene IDs):

STEP 2: Enter background genes

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All 7130 genes in the oPOSSUM database

OR a random set of  genes from the oPOSSUM database

OR paste gene IDs:

OR upload a file containing a list of gene identifiers:

STEP 3: Select transcription factor binding site profiles

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All fungi profiles with a minimum specificity of  bits (min. 8 bits)

OR select specific fungi profiles:

STEP 4: Select TFBS search parameters

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Matrix score threshold:
OR enter score threshold % (min. = 75%)

Amount of upstream sequence: OR enter custom values bp (max. = 1000)

Number of results to return:
Top results
OR only results with Z-score >= and Fisher score >= (Default values have been chosen based on empirical studies)

Sort results by:
Z-score Fisher score

Press the Submit button to perform the analysis or Reset to reset the analysis parameters to their default values.
Depending on parameters selected and server load, the analysis may take anywhere from a few seconds to several minutes to perform.